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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs4394398 chr8:10084394 C/T SGK223 chr8:8175258-8244008:- 0.36 6.09 2.3E-9 Box Plot
THCA rs4396743 chr2:101063715 C/T LOC285359 chr3:101431278-101432259:+ 0.35 5.9 6.72E-9 Box Plot
THCA rs4396913 chr3:90047036 T/C STX19 chr3:93733213-93747454:- 0.4 5.91 6.6E-9 Box Plot
THCA rs4398149 chr17:18268999 A/G LOC162632 chr17:16614993-16707819:+ 0.34 5.89 7.32E-9 Box Plot
THCA rs4398644 chr5:44867318 C/T LRRC45 chr17:79981178-79989027:+ -0.42 -6.46 2.54E-10 Box Plot
THCA rs4401580 chr5:45789966 G/A LOC647121 chr1:121260910-121313686:+ -0.39 -8.16 2.98E-15 Box Plot
THCA rs4403412 chr8:10153281 T/C SGK223 chr8:8175258-8244008:- 0.32 6.09 2.35E-9 Box Plot
THCA rs4407973 chr9:141057299 C/T TUBB4Q chr4:190903679-190906024:- -0.84 -16.25 1.38E-47 Box Plot
THCA rs4407973 chr9:141057299 C/T TUBB8 chr10:92832-120103:- -0.28 -5.87 7.96E-9 Box Plot
THCA rs4409106 chr5:46038106 A/G LOC647121 chr1:121260910-121313686:+ 0.37 8.03 7.75E-15 Box Plot
THCA rs4410870 chr8:11156120 C/G SGK223 chr8:8175258-8244008:- 0.43 7.5 3.14E-13 Box Plot
THCA rs4412337 chr8:11072020 C/T SGK223 chr8:8175258-8244008:- -0.47 -8.51 2.33E-16 Box Plot
THCA rs4413273 chr3:125780697 T/C ROPN1 chr3:123687368-123711025:- 0.33 5.92 6.25E-9 Box Plot
THCA rs4413734 chr8:11212778 C/T SGK223 chr8:8175258-8244008:- -0.36 -6.63 9.19E-11 Box Plot
THCA rs4421114 chr5:46069343 C/T LOC647121 chr1:121260910-121313686:+ -0.38 -8.17 2.87E-15 Box Plot